Table 1. List of category 6 and 7 genes in FigureC
Glomerulus cDNA clones
ENSEMBL gene IDENSEMBL gene nameENSEMBL SymbolRatio 1Ratio 2Ratio 3
Gene category 6
 1ENSMUSG00000026602PodocinNphs23.066.483.63
 2ENSMUSG00000006649NephrinNphs12.974.23.16
 3ENSMUSG00000030223Protein tyrosine phosphatase, receptor type, OPtpro2.434.553.25
 4ENSMUSG00000016458Wilms' tumor protein homologWt12.085.472.17
 5ENSMUSG000000500102.144.792.67
 6ENSMUSG00000037664Cyclin‐dependent kinase inhibitor 1CCdkn1c2.813.513.24
 7ENSMUSG00000022580Rhophilin 1Rhpn12.843.473.12
 8ENSMUSG00000035333protease inhibitor 15; cysteine‐rich secreted protein1.683.853.49
 9ENSMUSG000000592131.844.212.87
10ENSMUSG00000015093Chloride intracellular channel protein 3Clic32.712.443.73
11ENSMUSG00000029061Matrix metalloproteinase 23Mmp232.093.552.91
12ENSMUSG00000043079SynaptopodinSynpo2.842.572.95
13ENSMUSG00000003411Ras‐related protein Rab‐3BRab3b2.253.083.01
14ENSMUSG00000046714Forkhead box protein C2Foxc22.663.142.54
15ENSMUSG00000021904Semaphorin sem2 (GlomBase annotation)3.012.682.57
16ENSMUSG00000030513PACE4A (Fragment)Pcsk61.824.232.18
17ENSMUSG00000004105Angiopoietin‐related protein 2 precursorAngptl22.122.613.04
18ENSMUSG000000564922.511.832.6
19ENSMUSG00000025608Podocalyxin‐like protein 1 precursorPodxl2.22.262.41
20ENSMUSG000000296411.63.581.6
21ENSMUSG00000032679CD59A glycoprotein precursorCd59a1.683.511.53
22ENSMUSG00000025810Neuropilin‐1 precursor (A5 protein)Nrp12.542.721.28
23ENSMUSG00000038831Ral guanine nucleotide exchange factor RalGPS1ARalgps11.962.162.37
24ENSMUSG00000029887Maltase‐glucoamylaseMgam1.282.392.62
25ENSMUSG00000020431Adenylyl cyclase type IAdcy11.532.452.27
26ENSMUSG00000005501Ubiquitin carboxyl‐terminal hydrolase 40Usp401.721.612.87
27ENSMUSG00000020458Reticulon 4Rtn41.52.252.36
28ENSMUSG00000026817Adenylate kinase isoenzyme 1Ak11.42.412.27
29ENSMUSG00000052516Roundabout homolog 2 precursorRobo21.91.832.06
30ENSMUSG00000026305Leucine rich repeat (in FLII) interacting protein 1Lrrfip11.182.671.9
31ENSMUSG00000024534Synuclein, alpha interacting proteinSncaip1.252.452.03
32ENSMUSG00000039910Cbp/p300‐interacting transactivator 2Cited21.622.461.52
33ENSMUSG000000326251.471.772.29
34ENSMUSG00000022817Integrin beta‐5 precursorItgb51.221.782.45
35ENSMUSG00000018411Microtubule‐associated protein tauMapt1.932.021.49
36ENSMUSG000000189951.542.091.77
37ENSMUSG00000058056NIH actin‐associated protein palladin (Fragment)2410003B16Rik1.241.712.43
38ENSMUSG00000017446C1q and tumor necrosis factor related protein 1C1qtnf12.291.421.62
39ENSMUSG00000031217Ephrin‐B1 precursorEfnb11.52.21.56
40ENSMUSG00000029638Glucocorticoid induced transcript 1Glcci11.211.112.83
41ENSMUSG00000026584Ezrin‐binding partner PACE‐1Scyl31.521.411.9
42ENSMUSG00000020520UDP‐N‐acetyl‐alpha‐D‐galactosamine,Galnt10Galnt101.741.052.01
43ENSMUSG00000027170Dendritic cell protein GA17Ga171.211.931.64
44ENSMUSG00000020044Metalloproteinase inhibitor 3 precursorTimp31.42.151.13
45ENSMUSG00000020601Tribbles homolog 2Trib21.371.521.6
46ENSMUSG00000008348UbiquitinUbc1.151.451.81
47ENSMUSG00000042675Yippee‐like protein 3Ypel31.211.321.66
48ENSMUSG00000027777Schwannomin interacting protein 1Schip11.121.071.82
49ENSMUSG00000000325ArvcfArvcf1.191.011.77
 1EST2.453.092.77
 2EST2.493.262.25
 3EST1.992.992.30
 4EST Gene X (GlomBase annotation)2.282.792.12
 5EST2.192.252.72
 6EST2.242.951.86
 7EST2.702.011.48
 8EST1.261.882.64
 9EST1.552.141.89
10EST1.431.331.91
Gene category 7
ENSEMBL gene ID
1ENSMUSG00000026449Renin 1Ren13.096.26−2.48
2ENSMUSG00000026185Insulin‐like growth factor binding protein 5Igfbp52.183.51−4
3ENSMUSG000000240653.093.09−3.46
4ENSMUSG00000026768Integrin alpha 8Itga81.953.01−3.44
5ENSMUSG00000027996Secreted frizzled‐related sequence protein 2Sfrp21.454.05−2.26
6ENSMUSG00000033060LIM domain only protein 7 (GlomBase annotation)Lmo71.313.2−2.84
7ENSMUSG00000054690EndomucinEmcn2.381.85−2.71
8ENSMUSG00000026249Protease nexin ISerpine21.881.36−3.68
9ENSMUSG00000027210Homeobox protein Meis2Mrg11.32.45−2.54
10ENSMUSG00000054435Immune associated nucleotide 1 isoform b2.211.66−2.19
11ENSMUSG00000021759Lipid phosphate phosphohydrolase 1Ppap2a1.771.9−2.09
12ENSMUSG00000029273Sulfotransferase family 1D, member 1Sult1d11.32.66−1.78
13ENSMUSG000000395031.512.02−2.1
14ENSMUSG00000048376Proteinase activated receptor 1F2r2.171.58−1.55
15ENSMUSG00000028713Cytochrome P450 4B1Cyp4b11.961.61−1.48
16ENSMUSG000000112631.821.49−1.66
17ENSMUSG00000051855Mesoderm specific transcriptMest1.212.03−1.64
18ENSMUSG00000039706LIM domain binding 2Ldb21.471.46−1.84
Category 6 genes represent podocyte marker candidates and category 7 genes represent mesangial marker candidates. ISH validated novel cell‐type‐specific transcripts in bold. Clone ID refers to GlomBase cDNA clone. ESTs refer to cDNA clones without unambiguous ENSEMBLE annotation. For some genes (Sem2, GeneX), the given gene name refers to our own (GlomBase) annotation. Ratio 1–3 refer to log 2 ratios for comparison of glomeruli versus rest of kidney (Ratio 1), glomeruli versus brain capillaries (Ratio 2) and podocyte versus non‐podocyte glomerular cells (Ratio 3).